This page lists publications funded, at least in part, by ENCODE funds. The process of cataloging these publications is ongoing and updates to this page will be made periodically. The categories overlap, so some publications are listed more than once.

In addition to tracking ENCODE-funded publications, the ENCODE project also tracks papers that were not published by ENCODE authors and were not funded by ENCODE, but that reference ENCODE data. This is being done in part to see how the resource is being used. The papers are grouped in Human disease, Basic biology, and Tools/methods/databases/commentaries sections. As there is no systematic way to search for these publications this list is likely incomplete.

Please contact Mike Pazin at NHGRI to suggest publications to add to this list.